SNP Profiles of ICS 48 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AC	CT	CC	GG	GT	AT	AC	CT	AA	GT	AG	TT	AC
1._ICS_48	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
2._RUQ_146	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
3._ICS_48	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
4._ICS_48	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
5._ICS_48	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
6._ICS_48	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
7._ICS_48	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
8._ICS_48	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
9._ICS_48	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
10._ICS_48	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
11._ICS_48	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
12._RUQ_146	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
13._GC-05-120-3-22	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
14._GC-05-120-3-22	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
15._GC-05-120-3-22	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
16._GC-05-120-3-22	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
17._GC-05-078-2-29	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
18._GC-05-078-2-29	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
19._GC-05-078-2-29	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
20._GC-05-078-2-29	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
21._RUQ_146	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
22._ICS_48	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
23._GC-05-078-2-29	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
24._ICS_48_Fld#_105_Plt#_2	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	CC	AC	CT	CC	AG	CG	AT	AC	CC	TT	AG	CG
1._ICS_48	_	_	_	_	_	CC	_	CG	_	AC	_	_	_	_
2._RUQ_146	_	_	_	_	_	CC	_	CG	_	AC	_	_	_	_
3._ICS_48	_	_	_	_	_	CC	_	CG	_	AC	_	_	_	_
4._ICS_48	_	_	_	_	_	CC	_	CG	_	AC	_	_	_	_
5._ICS_48	_	_	_	_	_	CC	_	CG	_	AC	_	_	_	_
6._ICS_48	_	_	_	_	_	CC	_	CG	_	AC	_	_	_	_
7._ICS_48	_	_	_	_	_	CC	_	CG	_	AC	_	_	_	_
8._ICS_48	_	_	_	_	_	CC	_	CG	_	AC	_	_	_	_
9._ICS_48	_	_	_	_	_	CC	_	CG	_	AC	_	_	_	_
10._ICS_48	_	_	_	_	_	CC	_	CG	_	AC	_	_	_	_
11._ICS_48	_	_	_	_	_	CC	_	CG	_	AC	_	_	_	_
12._RUQ_146	AG	_	_	_	_	CC	_	GG	_	AA	CC	_	_	_
13._GC-05-120-3-22	AG	_	_	_	_	CC	_	CG	_	AC	CC	_	_	_
14._GC-05-120-3-22	AG	_	_	_	_	CC	_	CG	_	AC	CC	_	_	_
15._GC-05-120-3-22	AG	_	_	_	_	CC	_	CG	_	AC	CC	_	_	_
16._GC-05-120-3-22	AG	_	_	_	_	CC	_	CG	_	AC	CC	_	_	_
17._GC-05-078-2-29	AG	_	_	_	_	CC	_	CG	_	AC	CC	_	_	_
18._GC-05-078-2-29	AG	_	_	_	_	CC	_	CG	_	AC	CC	_	_	_
19._GC-05-078-2-29	AG	_	_	_	_	CC	_	CG	_	AC	CC	_	_	_
20._GC-05-078-2-29	AG	_	_	_	_	CC	_	CG	_	AC	CC	_	_	_
21._RUQ_146	AG	_	_	_	_	CC	_	CG	_	AC	GG	_	_	_
22._ICS_48	_	_	_	_	_	CC	_	CG	_	CC	_	_	_	_
23._GC-05-078-2-29	GG	_	_	_	_	CC	_	CG	_	CC	TT	_	_	_
24._ICS_48_Fld#_105_Plt#_2	GG	_	_	_	_	AC	_	CC	_	AC	AG	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	CG	CC	TT	AG	CT	CT	AC	AA	TT	CG	GG	CG	AA
1._ICS_48	AG	_	_	TT	_	_	_	_	_	_	CG	_	_	AA
2._RUQ_146	AG	_	_	TT	_	_	_	_	_	_	CG	_	_	AA
3._ICS_48	_	_	_	TT	_	_	_	_	_	_	CG	_	_	AA
4._ICS_48	_	_	_	TT	_	_	_	_	_	_	CG	_	_	AA
5._ICS_48	_	_	_	TT	_	_	_	_	_	_	CG	_	_	AA
6._ICS_48	_	_	_	TT	_	_	_	_	_	_	CG	_	_	AA
7._ICS_48	_	_	_	TT	_	_	_	_	_	_	CG	_	_	AA
8._ICS_48	_	_	_	TT	_	_	_	_	_	_	CG	_	_	AA
9._ICS_48	_	_	_	TT	_	_	_	_	_	_	CG	_	_	AA
10._ICS_48	AG	_	_	TT	_	_	_	_	_	_	CG	_	_	AA
11._ICS_48	AG	_	_	TT	_	_	_	_	_	_	CG	_	_	AA
12._RUQ_146	_	_	CC	TT	AG	_	_	AC	_	_	CG	GG	_	AA
13._GC-05-120-3-22	AG	_	CT	TT	AG	_	_	AC	_	GG	CG	GG	_	AA
14._GC-05-120-3-22	_	_	CT	TT	AG	_	_	AC	_	GG	CG	GG	_	AA
15._GC-05-120-3-22	_	_	CT	TT	AG	_	_	AC	_	GG	CG	GG	_	AA
16._GC-05-120-3-22	_	_	CT	TT	AG	_	_	AC	_	GG	CG	GG	_	AA
17._GC-05-078-2-29	_	_	CT	TT	AG	_	_	AC	_	GG	CG	GG	_	AA
18._GC-05-078-2-29	_	_	CT	TT	AG	_	_	AC	_	GG	CG	GG	_	AA
19._GC-05-078-2-29	_	_	CT	TT	AG	_	_	AC	_	GG	CG	GG	_	AA
20._GC-05-078-2-29	_	_	CT	TT	AG	_	_	AC	_	GG	CG	GG	_	AA
21._RUQ_146	_	_	_	AA	AG	_	_	AC	_	CC	CG	GG	_	AA
22._ICS_48	GG	_	_	GT	_	_	_	_	_	_	GG	_	_	AA
23._GC-05-078-2-29	GG	_	CC	GT	GG	_	_	CC	_	GG	GG	AG	_	AA
24._ICS_48_Fld#_105_Plt#_2	_	_	_	CC	AG	_	_	AC	_	CG	CC	AA	_	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	CT	AT	CC	AA	TT	CT	GT	AC	GT	GG	TT	GG	GG
1._ICS_48	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
2._RUQ_146	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
3._ICS_48	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
4._ICS_48	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
5._ICS_48	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
6._ICS_48	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
7._ICS_48	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
8._ICS_48	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
9._ICS_48	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
10._ICS_48	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
11._ICS_48	_	_	_	_	AA	_	_	_	_	GT	_	_	_	_
12._RUQ_146	CC	_	_	_	_	_	_	_	_	GT	_	_	_	_
13._GC-05-120-3-22	CC	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
14._GC-05-120-3-22	CC	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
15._GC-05-120-3-22	CC	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
16._GC-05-120-3-22	CC	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
17._GC-05-078-2-29	CC	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
18._GC-05-078-2-29	CC	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
19._GC-05-078-2-29	CC	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
20._GC-05-078-2-29	CC	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
21._RUQ_146	_	_	_	_	AA	_	_	_	_	AA	_	_	_	_
22._ICS_48	_	_	_	_	AA	_	TT	_	_	TT	_	_	_	_
23._GC-05-078-2-29	TT	_	_	_	AA	_	TT	_	_	TT	_	_	_	_
24._ICS_48_Fld#_105_Plt#_2	_	_	_	_	AG	_	_	_	_	AC	_	_	_	_

	57	58	59
_Input profile	CG	CT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._ICS_48	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_146	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._ICS_48	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._ICS_48	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._ICS_48	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._ICS_48	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._ICS_48	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._ICS_48	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._ICS_48	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._ICS_48	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._ICS_48	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._RUQ_146	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-05-120-3-22	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-05-120-3-22	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-05-120-3-22	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-05-120-3-22	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-05-078-2-29	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-05-078-2-29	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-05-078-2-29	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-05-078-2-29	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._RUQ_146	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._ICS_48	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._GC-05-078-2-29	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
24._ICS_48_Fld#_105_Plt#_2	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_48 RUQ_146

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._ICS_48

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 3 > FP

Dapeng Zhang, 2016

2._ICS_48 RUQ_146

identical
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 3

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 4

Dapeng Zhang, 2016

5._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 5

Dapeng Zhang, 2016

6._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 1 > FP

Dapeng Zhang, 2016

7._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 1

Dapeng Zhang, 2016

8._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 4

Dapeng Zhang, 2016

9._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 2 > FP

Dapeng Zhang, 2016

10._ICS_48

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

11._ICS_48

95.8 %
12 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E318 T6

Dapeng Zhang, 2016

12._ICS_48 RUQ_146

94.1 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._ICS_48 GC-05-120-3-22

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

14._ICS_48 GC-05-120-3-22

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

15._ICS_48 GC-05-120-3-22

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

16._ICS_48 GC-05-120-3-22

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

17._ICS_48 GC-05-078-2-29

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

18._ICS_48 GC-05-078-2-29

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

19._ICS_48 GC-05-078-2-29

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

20._ICS_48 GC-05-078-2-29

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

21._ICS_48 RUQ_146

73.5 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

22._ICS_48

69.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 2 > FP

Dapeng Zhang, 2016

23._ICS_48 GC-05-078-2-29

57.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

24._ICS_48 ICS_48_Fld#_105_Plt#_2

47.1 %
17 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 105, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1253	53	TcSNP1275	54	TcSNP1293	55	TcSNP1401
56	TcSNP1404	57	TcSNP1458	58	TcSNP1524	59	TcSNP1527